{
  "fileVersions": {
    "inMatrix": {
      "fname": "/hive/data/inside/cells/datasets/dev-brain-regions/wholebrain/counts_exprMatrix.tsv.gz",
      "md5": "791f09b29a",
      "size": 1153116645,
      "mtime": "2021-12-08 00:14:05"
    },
    "outMatrix": {
      "fname": "/usr/local/apache/htdocs-cells/dev-brain-regions/wholebrain/exprMatrix.tsv.gz",
      "md5": "6871e065f1",
      "size": 1138967789,
      "mtime": "2021-12-09 22:09:33"
    },
    "inMeta": {
      "fname": "/hive/data/inside/cells/datasets/dev-brain-regions/wholebrain/meta.curated.from_jim.tsv",
      "md5": "542d36fadc",
      "size": 96914356,
      "mtime": "2021-12-18 17:43:55"
    },
    "colors": {
      "fname": "/hive/data/inside/cells/datasets/dev-brain-regions/wholebrain/colors.tsv",
      "md5": "4ebd772af0",
      "size": 12124481,
      "mtime": "2022-01-11 22:02:08"
    },
    "outMeta": {
      "fname": "/usr/local/apache/htdocs-cells/dev-brain-regions/wholebrain/meta.tsv",
      "md5": "542d36fadc",
      "size": 96914356,
      "mtime": "2022-01-11 22:02:53"
    },
    "desc": {
      "fname": "desc.conf",
      "md5": "a7fef30ca0",
      "size": 2607,
      "mtime": "2021-10-15 15:36:22"
    },
    "conf": {
      "fname": "/hive/data/inside/cells/datasets/dev-brain-regions/wholebrain/cellbrowser.conf",
      "md5": "45e1dbe156",
      "size": 1619,
      "mtime": "2022-01-11 22:02:26"
    }
  },
  "matrixArrType": "Uint32",
  "sampleCount": 691928,
  "matrixWasFiltered": true,
  "metaFields": [
    {
      "name": "cell_name",
      "label": "cell_name",
      "type": "uniqueString",
      "maxSize": 47,
      "diffValCount": 691928,
      "md5": "f08c0a4a3f"
    },
    {
      "name": "structure",
      "label": "structure",
      "type": "enum",
      "valCounts": [
        [
          "neocortex",
          404218
        ],
        [
          "ganglionic eminence",
          131329
        ],
        [
          "hypothalamus",
          46969
        ],
        [
          "thalamus",
          46006
        ],
        [
          "allocortex",
          18934
        ],
        [
          "striatum",
          18852
        ],
        [
          "proneocortex",
          11245
        ],
        [
          "claustrum",
          10608
        ],
        [
          "cerebellum",
          2691
        ],
        [
          "midbrain",
          1076
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 10,
      "md5": "77e7f39416"
    },
    {
      "name": "area",
      "label": "area",
      "type": "enum",
      "valCounts": [
        [
          "parietal",
          87497
        ],
        [
          "prefrontal cortex",
          81417
        ],
        [
          "motor",
          69996
        ],
        [
          "V1",
          68071
        ],
        [
          "somatosensory",
          59121
        ],
        [
          "lateral",
          47291
        ],
        [
          "caudal",
          46334
        ],
        [
          "thalamus",
          45865
        ],
        [
          "temporal",
          45744
        ],
        [
          "hypothalamus",
          38977
        ],
        [
          "medial",
          37704
        ],
        [
          "hippocampus",
          14497
        ],
        [
          "claustrum",
          10608
        ],
        [
          "cingulate",
          10012
        ],
        [
          "caudate",
          9634
        ],
        [
          "putamen",
          5156
        ],
        [
          "preoptic",
          4942
        ],
        [
          "cerebellum",
          2691
        ],
        [
          "nucleus accumbens",
          2169
        ],
        [
          "striatum",
          1893
        ],
        [
          "insula",
          1233
        ],
        [
          "midbrain",
          1076
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 22,
      "md5": "8ddb449333"
    },
    {
      "name": "subarea",
      "label": "subarea",
      "type": "enum",
      "valCounts": [
        [
          "",
          648853
        ],
        [
          "ventral",
          11210
        ],
        [
          "dorsal",
          9270
        ],
        [
          "3rd_ventricle",
          7334
        ],
        [
          "anterior",
          4575
        ],
        [
          "pulminar",
          4264
        ],
        [
          "ventral_medial",
          3659
        ],
        [
          "caudal",
          2268
        ],
        [
          "left_hemisphere",
          495
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 9,
      "md5": "d35263a47f"
    },
    {
      "name": "lamina",
      "label": "lamina",
      "type": "enum",
      "valCounts": [
        [
          "all",
          596623
        ],
        [
          "VZ",
          52069
        ],
        [
          "DL",
          14516
        ],
        [
          "MZ",
          13273
        ],
        [
          "CP",
          6477
        ],
        [
          "OSVZ",
          3766
        ],
        [
          "UL",
          3353
        ],
        [
          "VZSVZ",
          1851
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 8,
      "md5": "47bec7fee9"
    },
    {
      "name": "cell_class",
      "label": "cell_class",
      "type": "enum",
      "colors": [
        "FFCC00",
        null,
        "505050",
        "F00055",
        "00B000",
        "A0A0FF"
      ],
      "valCounts": [
        [
          "neuron",
          478017
        ],
        [
          "glia",
          115944
        ],
        [
          "dividing",
          74949
        ],
        [
          "microglia",
          9626
        ],
        [
          "endothelial",
          9349
        ],
        [
          "outlier",
          4043
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 6,
      "md5": "016662b86e"
    },
    {
      "name": "cell_type",
      "label": "cell_type",
      "type": "enum",
      "colors": [
        "FFCC00",
        "FFDD00",
        "505050",
        "D020D0",
        "0000FF",
        "3060D0",
        "A050D0",
        "F00055",
        "00B000",
        "A0A0FF"
      ],
      "valCounts": [
        [
          "neuron",
          329685
        ],
        [
          "interneuron",
          148332
        ],
        [
          "dividing",
          74949
        ],
        [
          "radial glia",
          57028
        ],
        [
          "astrocyte",
          27763
        ],
        [
          "oligodendrocyte",
          21498
        ],
        [
          "intermediate progenitor cell",
          9655
        ],
        [
          "microglia",
          9626
        ],
        [
          "endothelial",
          9349
        ],
        [
          "outlier",
          4043
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 10,
      "md5": "e6c66818da"
    },
    {
      "name": "cell_cluster",
      "label": "cell_cluster",
      "type": "enum",
      "valCounts": [
        [
          "Interneuron_9",
          50443
        ],
        [
          "Neuron_22",
          36571
        ],
        [
          "Neuron_33",
          33117
        ],
        [
          "Interneuron_8",
          29909
        ],
        [
          "Neuron_37",
          29435
        ],
        [
          "Neuron_34",
          25024
        ],
        [
          "Interneuron_3",
          20052
        ],
        [
          "Neuron_16",
          19692
        ],
        [
          "Dividing_4",
          19022
        ],
        [
          "Dividing_5",
          17902
        ],
        [
          "Neuron_5",
          15348
        ],
        [
          "Astrocyte_4",
          13815
        ],
        [
          "Neuron_21",
          13140
        ],
        [
          "Neuron_18",
          12572
        ],
        [
          "Neuron_72",
          12024
        ],
        [
          "Neuron_98",
          11902
        ],
        [
          "Neuron_101",
          11544
        ],
        [
          "Oligo_6",
          10892
        ],
        [
          "Interneuron_7",
          10866
        ],
        [
          "Neuron_2",
          9825
        ],
        [
          "Neuron_100",
          9234
        ],
        [
          "RG_52",
          8337
        ],
        [
          "Dividing_21",
          8328
        ],
        [
          "Neuron_35",
          8228
        ],
        [
          "Neuron_63",
          8175
        ],
        [
          "GW20_Interneuron_34",
          8131
        ],
        [
          "Neuron_12",
          7624
        ],
        [
          "Neuron_15",
          6389
        ],
        [
          "GW20_Interneuron_32",
          6343
        ],
        [
          "Dividing_6",
          5997
        ],
        [
          "Neuron_93",
          5802
        ],
        [
          "RG_6",
          5495
        ],
        [
          "Neuron_19",
          5405
        ],
        [
          "Neuron_68",
          5026
        ],
        [
          "IPC_34",
          4782
        ],
        [
          "Neuron_20",
          4273
        ],
        [
          "RG_1",
          4206
        ],
        [
          "RG_4",
          4193
        ],
        [
          "Interneuron_5",
          4166
        ],
        [
          "GW19_2_45Outlier",
          4042
        ],
        [
          "Dividing_3",
          3858
        ],
        [
          "Dividing_9",
          3779
        ],
        [
          "Neuron_17",
          3748
        ],
        [
          "Astrocyte_2",
          3641
        ],
        [
          "Oligo_11",
          3609
        ],
        [
          "Interneuron_2",
          3603
        ],
        [
          "RG_9",
          3555
        ],
        [
          "RG_11",
          3465
        ],
        [
          "GW22both_RG_38",
          3454
        ],
        [
          "Neuron_29",
          3445
        ],
        [
          "RG_7",
          3433
        ],
        [
          "IPC_29",
          3234
        ],
        [
          "Endo_7",
          3202
        ],
        [
          "Interneuron_10",
          3202
        ],
        [
          "Neuron_13",
          3150
        ],
        [
          "Microglia_3",
          3095
        ],
        [
          "GW18_2_42Neuron",
          3091
        ],
        [
          "RG_15",
          2904
        ],
        [
          "RG_3",
          2856
        ],
        [
          "Interneuron_31",
          2785
        ],
        [
          "Neuron_3",
          2776
        ],
        [
          "Neuron_4",
          2774
        ],
        [
          "Oligo_9",
          2639
        ],
        [
          "Neuron_31",
          2466
        ],
        [
          "Microglia_2",
          2417
        ],
        [
          "Interneuron_1",
          2346
        ],
        [
          "Interneuron_24",
          2292
        ],
        [
          "RG_8",
          2250
        ],
        [
          "GW18_Astrocyte_17",
          2250
        ],
        [
          "Dividing_1",
          2242
        ],
        [
          "Neuron_50",
          2208
        ],
        [
          "Microglia_8",
          2206
        ],
        [
          "Dividing_2",
          2198
        ],
        [
          "Endo_11",
          2192
        ],
        [
          "Astrocyte_3",
          2162
        ],
        [
          "Dividing_11",
          2126
        ],
        [
          "Neuron_92",
          2036
        ],
        [
          "Interneuron_6",
          2000
        ],
        [
          "Astrocyte_1",
          1947
        ],
        [
          "Neuron_39",
          1929
        ],
        [
          "Interneuron_43",
          1812
        ],
        [
          "Endo_8",
          1809
        ],
        [
          "Dividing_13",
          1805
        ],
        [
          "Dividing_15",
          1739
        ],
        [
          "GW22both_RG_23",
          1738
        ],
        [
          "IPC_18",
          1639
        ],
        [
          "Oligo_2",
          1533
        ],
        [
          "RG_50",
          1455
        ],
        [
          "Neuron_7",
          1421
        ],
        [
          "RG_13",
          1404
        ],
        [
          "Dividing_48",
          1335
        ],
        [
          "RG_22",
          1295
        ],
        [
          "Neuron_28",
          1256
        ],
        [
          "RG_59",
          1245
        ],
        [
          "Neuron_10",
          1203
        ],
        [
          "Neuron_6",
          1164
        ],
        [
          "Dividing_42",
          1140
        ],
        [
          "Astrocyte_6",
          1128
        ],
        [
          "RG_5",
          1110
        ],
        [
          "Neuron_32",
          1019
        ],
        [
          "RG_37",
          925
        ],
        [
          "GW19_2_30RG",
          921
        ],
        [
          "GW19_2_29Neuron",
          918
        ],
        [
          "Oligo_8",
          840
        ],
        [
          "GW19_Astrocyte_35",
          817
        ],
        [
          "GW19_Dividing_39",
          808
        ],
        [
          "Dividing_41",
          795
        ],
        [
          "RG_45",
          757
        ],
        [
          "Dividing_14",
          735
        ],
        [
          "Dividing_10",
          708
        ],
        [
          "Oligo_5",
          700
        ],
        [
          "GW20_Astrocyte_39",
          654
        ],
        [
          "RG_47",
          650
        ],
        [
          "Endo_2",
          595
        ],
        [
          "RG_2",
          584
        ],
        [
          "Microglia_6",
          580
        ],
        [
          "Neuron_8",
          530
        ],
        [
          "Neuron_64",
          525
        ],
        [
          "Neuron_26",
          515
        ],
        [
          "GW19_Astrocyte_53",
          482
        ],
        [
          "Neuron_36",
          459
        ],
        [
          "Microglia_15",
          457
        ],
        [
          "Neuron_66",
          413
        ],
        [
          "GW18_Astrocyte_26",
          382
        ],
        [
          "Interneuron_4",
          382
        ],
        [
          "Neuron_11",
          375
        ],
        [
          "Microglia_16",
          372
        ],
        [
          "GW18_2_45Oligo",
          337
        ],
        [
          "GW18_Astrocyte_51",
          331
        ],
        [
          "Endo_4",
          322
        ],
        [
          "Oligo_12",
          321
        ],
        [
          "Neuron_53",
          316
        ],
        [
          "Neuron_102",
          302
        ],
        [
          "Oligo_7",
          252
        ],
        [
          "Neuron_23",
          235
        ],
        [
          "Neuron_30",
          235
        ],
        [
          "RG_10",
          219
        ],
        [
          "Oligo_4",
          213
        ],
        [
          "Endo_3",
          203
        ],
        [
          "Neuron_24",
          195
        ],
        [
          "Neuron_25",
          189
        ],
        [
          "RG_12",
          184
        ],
        [
          "Endo_12",
          166
        ],
        [
          "Astrocyte_5",
          154
        ],
        [
          "RG_17",
          154
        ],
        [
          "Endo_1",
          139
        ],
        [
          "Oligo_3",
          135
        ],
        [
          "Neuron_9",
          129
        ],
        [
          "Neuron_27",
          126
        ],
        [
          "Dividing_16",
          116
        ],
        [
          "Endo_5",
          114
        ],
        [
          "Microglia_10",
          114
        ],
        [
          "Neuron_1",
          108
        ],
        [
          "Dividing_7",
          105
        ],
        [
          "Microglia_1",
          103
        ],
        [
          "RG_46",
          99
        ],
        [
          "RG_16",
          99
        ],
        [
          "Microglia_4",
          95
        ],
        [
          "Microglia_5",
          93
        ],
        [
          "Endo_15",
          92
        ],
        [
          "Dividing_8",
          91
        ],
        [
          "Endo_9",
          91
        ],
        [
          "Neuron_14",
          79
        ],
        [
          "Dividing_12",
          77
        ],
        [
          "Endo_10",
          74
        ],
        [
          "Endo_14",
          63
        ],
        [
          "GW17_Vascular_14",
          62
        ],
        [
          "Endo_16",
          55
        ],
        [
          "Microglia_76",
          51
        ],
        [
          "Dividing_18",
          43
        ],
        [
          "Endo_13",
          41
        ],
        [
          "RG_14",
          41
        ],
        [
          "GW14_Microglia_27",
          40
        ],
        [
          "Endo_6",
          39
        ],
        [
          "Endo_34",
          35
        ],
        [
          "GW17_Vascular_21",
          34
        ],
        [
          "Oligo_1",
          27
        ],
        [
          "Endo_26",
          21
        ],
        [
          "GW19_2_43Microglia",
          3
        ],
        [
          "GW19_2_1Outlier",
          1
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 180,
      "md5": "429ba3cdf2"
    },
    {
      "name": "age",
      "label": "age",
      "type": "enum",
      "valCounts": [
        [
          "18",
          206336
        ],
        [
          "20",
          193933
        ],
        [
          "25",
          105190
        ],
        [
          "19",
          98113
        ],
        [
          "22",
          63146
        ],
        [
          "14",
          21198
        ],
        [
          "17",
          4012
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 7,
      "md5": "417cc1c355"
    },
    {
      "name": "individual",
      "label": "individual",
      "type": "enum",
      "valCounts": [
        [
          "GW18_2",
          113415
        ],
        [
          "GW25",
          105190
        ],
        [
          "GW19",
          98113
        ],
        [
          "GW18",
          92921
        ],
        [
          "GW20",
          83432
        ],
        [
          "GW20_34",
          62766
        ],
        [
          "GW20_31",
          47735
        ],
        [
          "GW22T",
          36788
        ],
        [
          "GW22",
          26358
        ],
        [
          "GW14",
          21198
        ],
        [
          "GW17",
          4012
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 11,
      "md5": "5de23bd288"
    },
    {
      "name": "ngene",
      "label": "ngene",
      "arrType": "float32",
      "type": "int",
      "diffValCount": 5836,
      "md5": "537a066181"
    },
    {
      "name": "numi",
      "label": "numi",
      "arrType": "float32",
      "type": "int",
      "diffValCount": 18977,
      "md5": "914b103da9"
    },
    {
      "name": "percent_mito",
      "label": "percent_mito",
      "arrType": "float32",
      "type": "float",
      "diffValCount": 100431,
      "md5": "ef8e2f0292"
    },
    {
      "name": "percent_ribo",
      "label": "percent_ribo",
      "arrType": "float32",
      "type": "float",
      "diffValCount": 421827,
      "md5": "905bf5818b"
    },
    {
      "name": "ncount_rna",
      "label": "ncount_rna",
      "arrType": "float32",
      "type": "int",
      "diffValCount": 18945,
      "md5": "28a77d6356"
    },
    {
      "name": "nfeature_rna",
      "label": "nfeature_rna",
      "arrType": "float32",
      "type": "int",
      "diffValCount": 5845,
      "md5": "8d84368f0c"
    },
    {
      "name": "color",
      "label": "color",
      "type": "enum",
      "valCounts": [
        [
          "#FFCC00",
          329685
        ],
        [
          "#FFDD00",
          148332
        ],
        [
          "#505050",
          74949
        ],
        [
          "#D020D0",
          57028
        ],
        [
          "#0000FF",
          27763
        ],
        [
          "#3060D0",
          21498
        ],
        [
          "#A050D0",
          9655
        ],
        [
          "#F00055",
          9626
        ],
        [
          "#00B000",
          9349
        ],
        [
          "#A0A0FF",
          4043
        ]
      ],
      "arrType": "Uint8",
      "diffValCount": 10,
      "md5": "e014285df6"
    }
  ],
  "labelField": "cell_cluster",
  "coords": [
    {
      "name": "coords_0",
      "shortLabel": "Seurat UMAP",
      "md5": "21dc2a4f2f",
      "minX": 0,
      "maxX": 65535,
      "minY": 0,
      "maxY": 65535,
      "type": "Uint16",
      "textFname": "Seurat_UMAP.coords.tsv.gz",
      "labelMd5": "e4cecbfe36"
    }
  ],
  "hasFiles": [
    "datasetDesc"
  ],
  "markers": [],
  "quickGenes": [
    [
      "PTN",
      "Astrocyte, RG"
    ],
    [
      "AC090498.1",
      "CR"
    ],
    [
      "HMGB2",
      "Dividing"
    ],
    [
      "B2M",
      "Endothelial, Vascular"
    ],
    [
      "GAP43",
      "Excitatory Neuron"
    ],
    [
      "PPP1R17",
      "IPC"
    ],
    [
      "DLX6-AS1",
      "Interneuron"
    ],
    [
      "GPX1",
      "Microglia"
    ],
    [
      "BASP1",
      "Neuron"
    ],
    [
      "PTPRZ1",
      "Oligodendrocyte"
    ],
    [
      "NNAT",
      "Outlier"
    ],
    [
      "VIM",
      "Radial Glia"
    ]
  ],
  "name": "dev-brain-regions/wholebrain",
  "shortLabel": "Whole Brain",
  "clusterField": "cell_cluster",
  "body_parts": [
    "brain"
  ],
  "parents": [
    [
      "",
      "All Datasets"
    ],
    [
      "dev-brain-regions",
      "Developing Human Brain and Neocortex"
    ]
  ],
  "md5": "c7e542325d"
}