UCSC Cell Browser
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Qualitative: Rainbow
Qualitative: Tatarize
Qualitative: Iwanthue
Semi-Qualitative: Paul Tol's
Gradient: shades of blue
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Gradient: Viridis
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Gradient: Plasma
Annotation
Gene
Layout
Color by Annotation
batch
n_genes_by_counts
branchings
pseudotime
Percent Mitochond.
total_counts
super_batch
phase
clusters
clusters
Label by Annotation
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batch
branchings
super_batch
phase
clusters
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index
batch
n genes by counts
branchings
pseudotime
Percent Mitochond.
total counts
super batch
phase
clusters
Color by Gene
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Multi Gene
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Recent Genes
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Click to color by gene
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Dataset Genes
TEX11
FANCM
RNF212
STAG3
MEIOB
FANCA
TEX14
DNAH6
SOX8
CLDN11
SOX9
CLU
CTSL
HSD17B11
CYP17A1
VCAM1
FABP3
DLK1
STAR
CYP11A1
ACTA2
MYH11
PDGFRB
TM4SF1
CLDN5
PECAM1
VWF
TIE1
TEK
CD14
CD163
APOE
DAB2
CD74
ADGRE1
ID2
RORA
THY1
CD52
CRABP1
DAZL
HIST1H1A
NANOS3
STRA8
DMRT1
DMRTB1
GFRA1
HIST1H1A
SYCP1
TDRD1
PRSS50
PIWIL2
MEIOC
HORMAD1
HORMAD2
HIST1H1T
GPAT2
PIWIL1
PTTG1
PRM1
PRM2
PRM3
TNP1
TNP2
DYRK4
ESX1
KLF17
INSL6
SPAG6
ACRV1
SPACA1
Layout
UMAP representation
PCA representation
Diffusion map representation
Monocle cell representation
Trimap projection
UMAP representation
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