UCSC Cell Browser
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Qualitative: Rainbow
Qualitative: Tatarize
Qualitative: Iwanthue
Semi-Qualitative: Paul Tol's
Gradient: shades of blue
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Gradient: beige to red
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Gradient: Viridis
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Gradient: Inferno
Gradient: Plasma
Annotation
Gene
Layout
Color by Annotation
free_annotation_v1
cell_ontology_class_v1
compartment_v1
dendrogram_annotation_number
nCount_RNA
nFeature_RNA
possibly_contaminated_barcode_10x
nMHC_C_I
nMHC_NC_I
nMHC_all_II
free_annotation_v1
Label by Annotation
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free_annotation_v1
cell_ontology_class_v1
compartment_v1
dendrogram_annotation_number
possibly_contaminated_barcode_10x
No label
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cellId
free annotation v1
cell ontology class v1
compartment v1
dendrogram annotation number
nCount RNA
nFeature RNA
possibly contaminated barcode 10x
nMHC C I
nMHC NC I
nMHC all II
Color by Gene
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Multi Gene
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Recent Genes
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Click to color by gene
null
Dataset Genes
EPCAM
CDH1
DSP
KRT8
CLDN5
CDH5
COL1A2
PDGFRA
DCN
BGN
PTPRC
RAC2
CD19
MS4A1
JCHAIN
CD3D
CD3E
CD4
CD8A
NCAM1
CSF1R
MSR1
S100A8
FLT3
GYPA
GP9
ITGA2B
MKI67
STMN1
Layout
UMAP
pca
UMAP
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Gene Expression Plots
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