UCSC Cell Browser
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How to use this website
Interactive Tutorial
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Colors
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Qualitative: Rainbow
Qualitative: Tatarize
Qualitative: Iwanthue
Semi-Qualitative: Paul Tol's
Gradient: shades of blue
Gradient: shades of red
Gradient: beige to red
Gradient: blue to red
Gradient: Viridis
Gradient: Magma
Gradient: Inferno
Gradient: Plasma
Annotation
Gene
Layout
Color by Annotation
sample
sample_new
group
disease
hasnCoV
cluster
celltype
celltype
Label by Annotation
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sample
sample_new
group
disease
hasnCoV
cluster
celltype
cluster
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Cells are selected. No update on hover.
ID
sample
sample new
group
disease
hasnCoV
cluster
celltype
Color by Gene
Split on this gene
Multi Gene
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Recent Genes
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Click to color by gene
null
Dataset Genes
CD79A
MS4A1
KRT19
SLPI
GPNMB
MSR1
TPSAB1
CPA3
NKG7
KLRD1
NAMPT
IFITM2
JCHAIN
MZB1
IL32
CD3E
LGALS2
CST7
CD7
TSPAN13
Layout
Seurat UMAP
Seurat tSNE
Seurat UMAP
Circle size factor (1-7)
Transparency factor (1-7)
You can also change size and transparency with the sliders at the bottom right of the image
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Gene Expression Plots
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