UCSC Cell Browser
File
Open dataset...
o
Download bitmap image (PNG)
Download vector image (SVG)
Edit
Select all visible
s a
Select none
s n
Invert selection
s i
Name selection...
s s
Export selected...
Find cells...
f c
Find by ID...
f i
View
Zoom in
+
Zoom out
-
Zoom 100%
space
Split screen
t
Toggle Heatmap
h
Hide labels
c l
Tools
Remove all custom annotations
Set as background cells
b s
Reset background cells
b r
Help
About
How to use this website
Interactive Tutorial
Setup your own cell browser
+
100%
-
7714 visible cells loaded
Dataset: Human Pancreas
Loading...
http://cells.ucsc.edu/human-pancreas/metaFields/CellType.bin.gz
Loading...
Circle Size
Transparency
Legend
Colors
Reset to Default
Qualitative: Rainbow
Qualitative: Tatarize
Qualitative: Iwanthue
Semi-Qualitative: Paul Tol's
Gradient: shades of blue
Gradient: shades of red
Gradient: beige to red
Gradient: blue to red
Gradient: Viridis
Gradient: Magma
Gradient: Inferno
Gradient: Plasma
CellType
Click buttons to select cells
All
None
Invert
> 0
☑
Name
Frequency
▼
beta
31.3%
▼
alpha
29.2%
▼
ductal
11.8%
▼
acinar
8.0%
▼
delta
6.9%
▼
activated stellate
3.3%
▼
gamma
3.2%
▼
endothelial
3.1%
▼
quiescent stellate
2.1%
▼
macrophage
0.4%
▼
mast
0.2%
▼
epsilon
0.2%
▼
schwann
0.2%
▼
t cell
0.06%
Export Legend
Annotation
Gene
Layout
Color by Annotation
CellType
batch
UMI Count
log1p_n_counts
Expressed Genes
log1p_n_genes
percent_ribo
percent_hb
percent_top50
CellType
Label by Annotation
No label
CellType
batch
CellType
Hover over a cell to update data below
Cells are selected. No update on hover.
index
CellType
batch
UMI Count
log1p n counts
Expressed Genes
log1p n genes
percent ribo
percent hb
percent top50
Color by Gene
Split on this gene
Multi Gene
Reset to default coloring
Recent Genes
Hover or select cells to update colors here
Click to color by gene
null
Dataset Genes
CTRB1
COL6A2
GCG
INS
SST
TACSTD2
PLVAP
GHRL
PPY
TYROBP
LAPTM5
C11orf96
CRYAB
CORO1A
Layout
umap_hm
umap_hm
Circle size factor (1-7)
Transparency factor (1-7)
You can also change size and transparency with the sliders at the bottom right of the image
Copy field value to clipboard
Copy field value to clipboard
Remove custom annotations
Hide selected
Only show selected
Show all
Info & Download
Open...
Gene Expression Plots
Genome Browser
search for gene...
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose
less
cancel
choose