UCSC Cell Browser
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Help
About
How to use this website
Interactive Tutorial
Setup your own cell browser
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Circle Size
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Colors
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Qualitative: Rainbow
Qualitative: Tatarize
Qualitative: Iwanthue
Semi-Qualitative: Paul Tol's
Gradient: shades of blue
Gradient: shades of red
Gradient: beige to red
Gradient: blue to red
Gradient: Viridis
Gradient: Magma
Gradient: Inferno
Gradient: Plasma
Annotation
Gene
Layout
Color by Annotation
sample_id
CellType
BroadCellType
CellType
Label by Annotation
No label
sample_id
CellType
BroadCellType
sample_id
Hover over a cell to update data below
Cells are selected. No update on hover.
index
sample id
CellType
BroadCellType
Color by Gene
Split on this gene
Multi Gene
Reset to default coloring
Recent Genes
Hover or select cells to update colors here
Click to color by gene
null
Dataset Genes
APOC3
IGFBP7
DNASE1L3
RAMP3
ANXA4
MYL9
TYROBP
C1QA
CD3D
CD7
GNLY
TUBA1B
CD74
MZB1
HBB
Layout
umap_hm
pca
pca_hm
umap_hm
Circle size factor (1-7)
Transparency factor (1-7)
You can also change size and transparency with the sliders at the bottom right of the image
Copy field value to clipboard
Copy field value to clipboard
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Info & Download
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Gene Expression Plots
Genome Browser
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