UCSC Cell Browser
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Qualitative: Rainbow
Qualitative: Tatarize
Qualitative: Iwanthue
Semi-Qualitative: Paul Tol's
Gradient: shades of blue
Gradient: shades of red
Gradient: beige to red
Gradient: blue to red
Gradient: Viridis
Gradient: Magma
Gradient: Inferno
Gradient: Plasma
Annotation
Gene
Layout
Color by Annotation
All_reads
Assay
Batch
Development_day
Exon_reads
Experiment_batch
Fetus_id
Intron_reads
Main_cluster_name
Organ
Organ_cell_lineage
RT_group
Sex
batch
UMI Count
sample
Main_cluster_name
Label by Annotation
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Assay
Batch
Experiment_batch
Fetus_id
Main_cluster_name
Organ
Organ_cell_lineage
RT_group
Sex
RT_group
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Cells are selected. No update on hover.
cellId
All reads
Assay
Batch
Development day
Exon reads
Experiment batch
Fetus id
Intron reads
Main cluster name
Organ
Organ cell lineage
RT group
Sex
batch
UMI Count
sample
Color by Gene
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Multi Gene
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Recent Genes
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Click to color by gene
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Dataset Genes
No genes or peaks defined. Use the setting quickGenesFile in
Layout
Global UMAP
Adrenal UMAP
Cerebellum UMAP
Cerebrum UMAP
Eye UMAP
Heart UMAP
Intestine UMAP
Kidney UMAP
Liver UMAP
Lung UMAP
Muscle UMAP
Pancreas UMAP
Placenta UMAP
Spleen UMAP
Stomach UMAP
Thymus UMAP
Global UMAP
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Gene Expression Plots
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